Information for 6-CGGTTTR (Motif 6)

A G U C U C A G A C U G C G A U A C G U A G C U C U A G
Reverse Opposite:
A G U C C U G A G U C A G C U A A G U C A G U C A C U G
p-value:1e-7
log p-value:-1.830e+01
Information Content per bp:1.816
Number of Target Sequences with motif211.0
Percentage of Target Sequences with motif21.10%
Number of Background Sequences with motif116.7
Percentage of Background Sequences with motif11.81%
Average Position of motif in Targets255.8 +/- 154.5bp
Average Position of motif in Background241.3 +/- 177.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.15
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

hsa-miR-1537 MIMAT0007399 Homo sapiens miR-1537 Targets (miRBase)

Match Rank:1
Score:0.73
Offset:-15
Orientation:forward strand
Alignment:---------------CGGTTTR
ACAACTGTAACTAGACGGTTTT
 A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A G U C U C A G A C U G C G A U A C G U A G C U C U A G
C G U A A G U C C G U A C G U A A G U C A C G U A C U G A C G U C G U A C G U A A G U C A C G U C G U A A C U G C G U A A G U C A C U G A C U G A C G U A C G U A C G U A C G U

hsa-miR-451 MIMAT0001631 Homo sapiens miR-451 Targets (miRBase)

Match Rank:2
Score:0.70
Offset:-16
Orientation:forward strand
Alignment:----------------CGGTTTR
AACTCAGTAATGGTAACGGTTT-
 A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A G U C U C A G A C U G C G A U A C G U A G C U C U A G
C G U A C G U A A G U C A C G U A G U C C G U A A C U G A C G U C G U A C G U A A C G U A C U G A C U G A C G U C G U A C G U A A G U C A C U G A C U G A C G U A C G U A C G U A C G U

hsa-miR-671-3p MIMAT0004819 Homo sapiens miR-671-3p Targets (miRBase)

Match Rank:3
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--CGGTTTR------------
TCCGGTTCTCAGGGCTCCACC
 A C G U A C G U A G U C U C A G A C U G C G A U A C G U A G C U C U A G A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U
A C G U A G U C A G U C A C U G A C U G A C G U A C G U A G U C A C G U A G U C C G U A A C U G A C U G A C U G A G U C A C G U A G U C A G U C C G U A A G U C A G U C

hsa-miR-299-5p MIMAT0002890 Homo sapiens miR-299-5p Targets (miRBase)

Match Rank:4
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CGGTTTR---------------
TGGTTTACCGTCCCACATACAT
 A G U C U C A G A C U G C G A U A C G U A G C U C U A G A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U
A C G U A C U G A C U G A C G U A C G U A C G U C G U A A G U C A G U C A C U G A C G U A G U C A G U C A G U C C G U A A G U C C G U A A C G U C G U A A G U C C G U A A C G U

hsa-miR-4748 MIMAT0019884 Homo sapiens miR-4748 Targets (miRBase)

Match Rank:5
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CGGTTTR-------------
GAGGTTTGGGGAGGATTTGCT
 A C G U A G U C U C A G A C U G C G A U A C G U A G C U C U A G A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U
A C U G C G U A A C U G A C U G A C G U A C G U A C G U A C U G A C U G A C U G A C U G C G U A A C U G A C U G C G U A A C G U A C G U A C G U A C U G A G U C A C G U

hsa-miR-4464 MIMAT0018988 Homo sapiens miR-4464 Targets (miRBase)

Match Rank:6
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CGGTTTR-------------
AAGGTTTGGATAGATGCAATA
 A C G U A G U C U C A G A C U G C G A U A C G U A G C U C U A G A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U
C G U A C G U A A C U G A C U G A C G U A C G U A C G U A C U G A C U G C G U A A C G U C G U A A C U G C G U A A C G U A C U G A G U C C G U A C G U A A C G U C G U A

hsa-miR-125b-1* MIMAT0004592 Homo sapiens miR-125b-1* Targets (miRBase)

Match Rank:7
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CGGTTTR--------------
ACGGGTTAGGCTCTTGGGAGCT
 A C G U A G U C U C A G A C U G C G A U A C G U A G C U C U A G A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U
C G U A A G U C A C U G A C U G A C U G A C G U A C G U C G U A A C U G A C U G A G U C A C G U A G U C A C G U A C G U A C U G A C U G A C U G C G U A A C U G A G U C A C G U

hsa-miR-548ac MIMAT0018938 Homo sapiens miR-548ac Targets (miRBase)

Match Rank:8
Score:0.62
Offset:-13
Orientation:forward strand
Alignment:-------------CGGTTTR--
CAAAAGTAATTGCCGGTTTTTG
 A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A G U C U C A G A C U G C G A U A C G U A G C U C U A G A C G U A C G U
A G U C C G U A C G U A C G U A C G U A A C U G A C G U C G U A C G U A A C G U A C G U A C U G A G U C A G U C A C U G A C U G A C G U A C G U A C G U A C G U A C G U A C U G

hsa-miR-548z MIMAT0018446 Homo sapiens miR-548z Targets (miRBase)

Match Rank:9
Score:0.61
Offset:-14
Orientation:forward strand
Alignment:--------------CGGTTTR--
TGCAAAAGTAATTGCGGTTTTTG
 A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A G U C U C A G A C U G C G A U A C G U A G C U C U A G A C G U A C G U
A C G U A C U G A G U C C G U A C G U A C G U A C G U A A C U G A C G U C G U A C G U A A C G U A C G U A C U G A G U C A C U G A C U G A C G U A C G U A C G U A C G U A C G U A C U G

hsa-miR-1468 MIMAT0006789 Homo sapiens miR-1468 Targets (miRBase)

Match Rank:10
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CGGTTTR------------
CTCCGTTTGCCTGTTTCGCTG
 A C G U A C G U A G U C U C A G A C U G C G A U A C G U A G C U C U A G A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U
A G U C A C G U A G U C A G U C A C U G A C G U A C G U A C G U A C U G A G U C A G U C A C G U A C U G A C G U A C G U A C G U A G U C A C U G A G U C A C G U A C U G