RNAmod | Analysis

Single case

Upload your RNA modification sites:

Input files could be in BED format
To reduce the file size, we highly recommend that the file is further compressed in .zip or .gz format
The maximum size for BED file in each sample is 10 MB.

The fields marked by "*" are required!

Species *

Please choose a species for the analysis

Input *

Please input BED regions (≥ 50 sites) or upload BED file
Example (Hsa, hg19) Example (Mmu, mm10)

Select file Change Remove

Sample name

You can type a sample name

Flank size (bp) *

Flank size for transcription start/end sites (genomic level) Flank size for translation start/end sites and splice sites (transcript level)

Number of bins *

Divide gene feature into equal bins (features with length small than this value are excluded)

Scale RNA feature *

Scale the length of CDS and UTR in mRNA metagene plot

Genes for GO analysis

All genes with modifications Upload gene background

Please input gene symbols or Ensembl Gene IDs Example (hsa)

Motif parameters *

Motif width (separated by comma for multiple widths, such as 6,7,8 and 5,6)

Use subset of modification sites (score information are required in BED6)

You can get an notification when the job is completed (optional field)