RNAmod | Analysis

Group case

Upload the RNA modification lists in BED format (10MB maximum each) or job IDs of single case studies to perform comparative analysis:

If job ID is provided, the according job should be single case study and is completed
At least one sample for each group

The fields marked by "*" are required!

Input type *

BED files Job IDs

Species *

Please choose a species when inputting BED files.

Replicate 1 Peaks *

Example (mm10)

Replicate 1 Peaks *

Example (mm10)

Flank size (bp) *

Flank size for transcription start/end sites (genomic level) Flank size for translation start/end sites and splice sites (transcript level)

Number of bins *

Divide gene feature into equal bins (features with length small than this value are excluded)

Scale RNA feature length *

Scale the length of CDS and UTR in mRNA metagene plot

Replicates processing *

Intersect or union the replicates

Genes for GO analysis

All genes with modifications Upload gene background

Please input gene symbols or Ensembl Gene IDs Example (mm10)

Motif parameters *

Motif width (separated by comma for multiple widths, such as 6,7,8 and 5,6)

Use subset of modification sites (score information are required in BED6)

When the job is completed, you can get an notification (optional field)